I'm running K&N pods after starting with a stock airbox and then running cheap Emgo pods for a couple years. I've been one of the lucky ones who hasn't had problems getting my jetting right, but I'm also one of the ones willing to pull carbs off 15 times to make adjustments to make sure it's right. If you go pods, spend the money for the K&N, they are infinitely better than the cheap ass Emgo or Uni filters and definitely worth it.
To get my carbs jetted correctly (77 kz650b1 with vm26 carbs from a Suzuki GS750 and Mac 4-1 with very minimal baffling) I am running 17.5 pilots, 117.5 mains, with the needles on the #4 clip. Pilot screws are about 1 1/8 turn out from snug and air screws are about 1 3/4 turns out. Starts on the second or third kick stone cold (38 degree morning after sitting for almost 2 weeks), warms up in less than 2 minutes on choke, idles great, no hesitation at any point of throttle, pulls like a scalded dog all the way up to 10,500 rpm. In other words, runs great.